PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G006600.1
Common NameB456_010G006600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 226aa    MW: 24909 Da    PI: 6.1596
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G006600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.21.5e-07443538
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                         C+ + ++e++ fC+ ++  lC+ C    H+       H+
  Gorai.010G006600.1  4 QCDVCYKEEATVFCTADEAALCDACDHRVHHAnklaskHQ 43
                        7***************************964446666665 PP

2zf-B_box29.81.3e-095694238
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                        + + C+ ++ek++ lfC++++  lC+dC + +H+   Ht
  Gorai.010G006600.1 56 QVPLCDICQEKRAFLFCQQDRAILCRDCDVPIHSAneHT 94
                        6789*****************************657765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.907147IPR000315B-box-type zinc finger
CDDcd000219.70E-6347No hitNo description
PfamPF006437.6E-6443IPR000315B-box-type zinc finger
SMARTSM003364.9E-7447IPR000315B-box-type zinc finger
PROSITE profilePS5011910.16855102IPR000315B-box-type zinc finger
SMARTSM003366.0E-1655102IPR000315B-box-type zinc finger
PfamPF006434.7E-85694IPR000315B-box-type zinc finger
CDDcd000213.58E-1058102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MKIQCDVCYK EEATVFCTAD EAALCDACDH RVHHANKLAS KHQRFTLLHP CSSSKQVPLC  60
DICQEKRAFL FCQQDRAILC RDCDVPIHSA NEHTQRHNRF LLTGVKLSSR SATYNTTSSS  120
SNGGDSVPEF KVNNPISSIS PPDFNPSSNE VDGSTSSISE YLIEMLPGWH VEDLLDSSPS  180
LSPIGFCKND DGMLPFSDPS QSLYHLPQME GPIGLKETTM KGNKR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448517.11e-168PREDICTED: B-box zinc finger protein 21-like, partial
SwissprotQ9LQZ72e-80BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A0D2V3M31e-169A0A0D2V3M3_G
STRINGPOPTR_0002s02970.17e-93(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54002748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.12e-72salt tolerance homolog2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]